Code
During this course, you will develop a computational prowess that will aid in your understanding of physical biology. These will be done using Jupyter notebooks through Google Colab, so you will need to sign into a Google Account to create new notebooks.
We will post links to Jupyter Notebooks hosted on Colab of the tutorial sessions here.
Tutorials
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Tutorial 0.0 – A Primer On Jupyter Notebooks and Google Colab| This tutorial explains what a Jupyter Notebook is and how to use it on Google Colab.
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Tutorial 0.1 – A Primer On Python Syntax| This tutorial gives a quick intro to programming in Python.
Exercises
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Exercise 1| Exponential growth numerical integration by Forward Euler
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Exercise 2| Bacterial growth image segmentation and linear regression
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Exercise 3| Integrating Differential Equations - mRNA production
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Exercise 4| Diffusion Coin Flips
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Exercise 5| Diffusion with the Chemical Master Equation and the application to FRAP
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Exercise 6| Spheres in N-dimensions