During this course, you will develop a computational prowess that will aid in your understanding of physical biology. These will be done using Jupyter notebooks through Google Colab, so you will need to sign into a Google Account to create new notebooks.

We will post links to Jupyter Notebooks hosted on Colab of the tutorial sessions here.

Tutorials

Tutorial 0.0 – A Primer On Jupyter Notebooks and Google Colab| This tutorial explains what a Jupyter Notebook is and how to use it on Google Colab.
Tutorial 0.1 – A Primer On Python Syntax| This tutorial gives a quick intro to programming in Python.

Exercises

Exercise 1| Exponential growth; numerical integration by Forward Euler
Exercise 2| mRNA dynamics: mean trajectories and full count distributions
Exercise 3| Diffusion by Coin Flips; the Chemical Master Equation; FRAP; reset dynamics
Exercise 4| Reset dynamics; basic machine learning; PCA
Exercise 5| Selected topics: Dimensionality of behavior (eigenworms) TEMPLATE | link to image files