Code

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During this course, you will develop a computational prowess that will aid in your understanding of physical biology. These will be done using Jupyter notebooks through Google Colab, so you will need to sign into a Google Account to create new notebooks.

We will post links to Jupyter Notebooks hosted on colab of the tutorial sessions here.

Tutorials

• Tutorial 0.0 – A Primer On Jupyter Notebooks and Google Colab| This tutorial expalins what a Jupyter Notebook is and how to use it on Google Colab

• Tutorial 0.1 – A Primer On Python Syntax| This tutorial gives a quick intro to programming in Python.

Exercises

• Day 2 – Tutorial 1: Update rules applied for exponential growth and constitutive expression| In this exercise, we learn apply the simplest numerical scheme to integrate an ordinary differential equation.

• Day 2 – Tutorial 2: Dynamics and Stochasticity of Constitutive Expression| In this exercise, we use a chemical master equation to dissect dynamics of constitutive expression.