Readings and Videos

Readings and Videos


Readings

As the course progresses, we will post papers we find interesting or that we specifically mention in class.

  • The quantitative and condition-dependent Escherichia coli proteome by Alexander Schmidt, et al. in Nature biotechnology, 2016, 34(1).
  • Trophic Downgrading of Planet Earth by James A. Estes, et al. in Science, 2011, 333(6040).
  • Models in biology: 'accurate descriptions of our pathetic thinking' by Jeremy Gunawardena in BMC biology, 2014, 12(1).
  • Gene Regulation at the Single-Cell Level by Nitzan Rosenfeld, et al. in Science, 2005, 307(5717).
  • Real-Time Kinetics of Gene Activity in Individual Bacteria by Ido Golding, et al. in Cell, 2005, 123(6).
  • Evolution at two levels in humans and chimpanzees by Mary-Claire King, and Allan C. Wilson in Science, 1975, 188(4184).
  • Yeast kinesin-8 depolymerizes microtubules in a length-dependent manner by Vladimir Varga, et al. in Nature, 2006, 8(9).
  • Kinesin-8 motors act cooperatively to mediate length-dependent microtubule depolymerization by Vladimir Varga, et al. in Cell, 2009, 138(6).
  • An application of the Poisson distribution by R. D. Clarke in Journal of the Institute of Actuaries, 1946, 72(3).
  • Blackawton bees by Children from Blackawton, et al. in Biology Letters, 2011, 7(2).
  • What I’d Like to Know about 2105 (Talk given at ETH, Zurich) by N. David Mermin in , 2005, .
  • The depolymerizing kinesin MCAK uses lattice diffusion to rapidly target microtubule ends by Jonne Helenius, et al. in Nature, 2006, 441(4).
  • Life at low Reynolds number by Edward M. Purcell in American Journal of Physics, 1977, 45(3).
  • Channel gating governed symmetrically by conserved leucine residues in the M2 domain of nicotinic receptors by Cesar Labarca in Nature, 1995, 376(6540).
  • Probing the Limits to Positional Information by Thomas Gregor, et al. in Cell, 2007, 130(1).
  • Quantifying E. coli proteome and transcriptome with single-molecule sensitivity in single cells by Yuichi Taniguchi, et al. in Science, 2010, 329(5991).
  • The bicoid protein determines position in the Drosophila embryo in a concentration-dependent manner by Wolfgang Driever and Christiane Nüsslein-Volhard in Cell, 1989, 54(1).
  • Dynamic interpretation of maternal inputs by the Drosophila segmentation gene network by Feng Liu, et al. in PNAS, 2013, 110(17).
  • High Mobility of Bicoid Captured by Fluorescence Correlation Spectroscopy: Implication for the Rapid Establishment of Its Gradient by Asmahan Abu-Arish, et al. in Biophysical Journal, 2010, 99(4).
  • Maternal Origins of Developmental Reproducibility by Mariela D. Petkova, et al. in Current Biology, 2014, 24(11).
  • Measurement and Perturbation of Morphogen Lifetime: Effects on Gradient Shape by Jeffrey A. Drocco, et al. in Biophysical journal, 2011, 101(8).
  • Videos

  • Some Animals Are More Equal than Others: Keystone Species and Trophic Cascades (an HHMI video)