Figures
Chapter File  
Chapter 1 | Why: Biology by the Numbers JPEG PPT
Chapter 2 | What and Where: Construction Plans for Cells and Organisms JPEG PPT
Chapter 3 | When: Space and Time Across Many Scales JPEG PPT
Chapter 4 | Who: “Bless the Little Beasties” JPEG PPT
Chapter 5 | Mechanical and Chemical Equilibrium in the Living Cell JPEG PPT
Chapter 6 | Entropy Rules! JPEG PPT
Chapter 7 | Two-State Systems: From Ion Channels to Cooperative Binding JPEG PPT
Chapter 8 | Random Walks and the Structure of Macromolecules JPEG PPT
Chapter 9 | Electrostatics for Salty Solutions JPEG PPT
Chapter 10 | Beam Theory: Architecture for Cells and Skeletons JPEG PPT
Chapter 11 | Biological Membranes: Lie in Two Dimensions JPEG PPT
Chapter 12 | The Mathematics of Water JPEG PPT
Chapter 13 | A Statistical View of Biological Dynamics JPEG PPT
Chapter 14 | Life in Crowded and Disordered Environments JPEG PPT
Chapter 15 | Rate Equations and Dynamics in the Cell JPEG PPT
Chapter 16 | Dynamics of Molecular Motors JPEG PPT
Chapter 17 | Biological Electricity and the Hodgkin-Huxley Model JPEG PPT
Chapter 18 | Light and Life JPEG PPT
Chapter 19 | Organization of Biological Networks JPEG PPT
Chapter 20 | Biological Patterns: Order in Space and Time JPEG PPT
Chapter 21 | Sequences, Specificity, and Evolution JPEG PPT
Chapter 22 | Whither Physical Biology? JPEG PPT

MATLAB® and Mathematica® Code
Chapter File
Chapter 0 Introduction to Matlab
Chapter 2| What and Where: Construction Plans for Cells and Organisms Sizing up E. coli
  Counting mRNA and Proteins by Dilution
Chapter 3 | When: Stopwatches at Many Scales Timing E. coli
  Growth Curves and the Logistic Equation
Chapter 5 | Mechanical and Chemical Equilibrium in the Living Cell Determining the Spring Constant for an Optical Trap
Chapter 7 | Two-State Systems: From Ion Channels to Cooperative Binding Determining Ion Channel Open Probability by Thresholding
Chapter 17 | Biological Electricity and the Hodgkin-Huxley Model Numerical Solution for the Cable Equation
Chapter 18 | Light and Life Electrons in a Well of Finite Depth
Chapter 19 | Organization of Biological Networks Extracting Level of Gene Expression from Microscopy Images
  The Gillespie Algorithm and Stochastic Models of Gene Regulation
Chapter 20 | Biological Patters: Order in Space and Time Scaling of Morphogen Gradients
Chapter 21 | Sequences, Specificity, and Evolution Searching the E.coli genome for Binding Sites

Data Sets
Section File
Chapter 1 | Why: Biology by the Numbers Figure 1.11
Chapter 2 | What and Where: Construction Plans for Cells and Organisms Figure 2.02
  Figure 2.20
Chapter 3 | When: Stopwatches at Many Scales Figure 3.14A, Figure 3.14B
  Figure 3.15A, Figure 3.15B
  Figure 3.20
  Figure 3.33
Chapter 4 | Who: “Bless the Little Beasties” Figure 4.27
Chapter 5 | Mechanical and Chemical Equilibrium in the Living Cell Figure 5.5
  Figure 5.14
Chapter 6 | Entropy Rules! Figure 6.24
  Figure 6.28
Chapter 7 | Two-State Systems: From Ion Channels to Cooperative Binding Figure 7.2
  Figure 7.05
  Figure 7.23
  Figure 7.27
Chapter 8 | Random Walks and the Structure of Macromolecules Figure 8.11
  Figure 8.12
  Figure 8.14
  Figure 8.22
  Figure 8.35B
Chapter 9 | Electrostatics for Salty Solutions Figure 9.3
  Figure 9.20
Chapter 10 | Beam Theory: Architecture for Cells and Skeletons Figure 10.12
  Figure 10.17
  Figure 10.19B
  Figure 10.23
  Figure 10.25
  Figure 10.38
Chapter 11 | Biological Membranes: Life in Two Dimensions Figure 11.24
  Figure 11.35
  Figure 11.43
Chapter 12 | The Mathematics of Water Figure 12.20
Chapter 13 | A Statistical View of Biological Dynamics Figure 13.16
Chapter 14 | Life in Crowded and Disordered Environments Figure 14.3
  Figure 14.08
  Figure 14.11
  Figure 14.15
  Figure 14.18
  Figure 14.20
  Figure 14.24
  Figure 14.25
Chapter 15 | Rate Equations and Dynamics in the Cell Figure 15.13
  Figure 15.17
  Figure 15.23
  Figure 15.27
  Figure 15.32
  Figure 15.38
Chapter 16 | Dynamics of Molecular Motors Figure 16.27
  Figure 16.28
  Figure 16.34
  Figure 16.54
Chapter 18 | Light and Life Figure 18.20
  Figure 18.24
  Figure 18.30
  Figure 18.40
  Figure 18.58
Chapter 19 | Organization of Biological Networks Figure 19.2
  Figure 19.15
  Figure 19.22
  Figure 19.27
  Figure 19.28
  Figure 19.32
  Figure 19.33
  Figure 19.41
  Figure 19.62
  Figure 19.65
Chapter 20 | Biological Patterns: Order in Space and Time Figure 20.4
  Figure 20.6
  Figure 20.8
Chapter 21 | Sequences, Specificity, and Evolution Figure 21.14
  Figure 21.29

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