files
Papers mentioned during class
Week 1
Theodosius Dobzhansky (1973), Nothing in Biology Makes Sense Except in the Light of Evolution. The American Biology Teacher (March).
Measey et al. (2007), Freshwater paths across the ocean: molecular phylogeny of the frog Ptychadena newtoni gives insights into amphibian colonization of oceanic islands. Journal of Biogeograpy 34, pp. 7-20.
This paper explains the work on amphibians on the islands of the Gulf of Guinea.
Paul Nurse (2003), The great ideas of biology. Clinical Medicine 3(6), pp. 560-8.
This paper gives Nurse’s view of the five most important overarching ideas of biology.
Faaarhadifar et al. (2015), Scaling, Selection, and Evolutionary Dynamics of the Mitotic Spindle. Current Biology 25. pp. 1-9.
This wonderful paper explores the variation in the mitotic spindle for nematodes.
Stringham et al. (2012), Divergence, Convergence, and the Ancestry of Feral Populations in the DOmestic Rock Pigeon. Current Biology 22, pp. 302-8.
This is the very interesting paper on pigeons and the comparison between Darwin’s classification and the molecular picture.
Mel Greaves and Carlo C. Maley (2012), Clonal evolution in cancer. Nature 481(19), pp. 306-313.
Gilbert S. Omenn (2010), Evolution and public health. PNAS 107(1), pp.1702-9.
Carrièrea et al. (2012), Large-scale spatially-explicit test of the refuge strategy for delaying insecticide resistance. PNAS 109(3), pp. 775-80.
Week 2
Week 3
Emile Zuckerkandl an Linus Pauling (1965), Molecules as Documents of Evolutionary History. Journal of Theoretical Biology 8, pp. 357-66.
Eugene V. Koonin (2009), Darwinian evolution in the light of genomics. Nucleic Acids Research 37(4), pp. 1011-34.
E. Margoliash (1963), Primary structure and evolution of Cytochrome C. PNAS 50, pp. 672-9.
Sato et al. (1999), Phylogeny of Darwin's finches as revealed by mtDNA sequences. PNAS 96, pp. 5101-6.
1999 publication using molecular markers (mitochondrial gene sequences, cytochrome b) to infer the evolutionary history of the iconic finches in the Galapagos. Phylogenetic evidence of species relationships from sequence analysis differed from earlier data based on phenotypic similarities.
Daniela H. Palmer and Marcus R. Kronforst (2015), Divergence and gene flow among Darwin's finches: A genomewide view of adaptive radiation driven by interspecies allele sharing. Bioessays 37, pp. 968-974.
Recent review of comparative genomics for Darwin's finches highlighting
research into the genetic underpinnings of beak morphology and gene
flow within finch populations.
Further reading
The Great Naturalists and Deep Time
[ Crater Size ]
This tells how to compute the size of an asteroid crater from the properties of the asteroid itself.
[ Sulloway 1982 ]
This paper is a scholarly study of the role that the study of finches did and did not play in Darwin's thinking.
[ Various Authors 2009 ]
This series of articles commemorates the 200th
birthday of Darwin in 2009 with some excellent
insights into how our understanding of
evolution has matured since the time of Darwin.
[ Radioactive Isotope Dating ]
This website gives a number of insights into how radioactive isotopes are used as "clocks in the rocks."
[ Telford and Copely 2002 ]
This paper describes the recent use of other
genomic features besides the sequence itself
have been used for phylogenetic purposes.
[ Sleep 1989 ]
This paper is a study of large impacts on the surface of the Earth and their implications for life.
[ Phillip Gingerich ]
This fantastic video chronicles the work of Philip Gingerich and his discoveries of fossils which help us understand whale evolution.
[ Andrew Knoll ]
The excellent lecture by Andrew Knoll explains the challenges of exploring the history of life before the Cambrian.
From Mendel to Genome
[ Luria and Delbrück 1943 ]
This classic paper describes the efforts of Luria and Delbruck to measure how mutations conspire to yield resistance of bacteria to viral infection.
[ Lang 2008 ]
This is a modern use of the Luria-Delbruck fluctuation test to yeast and is the basis for the experiments we will do in class.
The Forces of Evolution
[ Reznick Guppy Evolution ]
The website of Prof. David Reznick gives some beautiful insights into his long term studies of the ecology and evolution of guppies in Trinidad.
[ Mitchell-Olds 2006 ]
This paper reports on careful studies that have
been made on natural variation in the "model
organism" Arabidopsis thaliana.
[ Buri 1956 ]
This paper is a classic study on genetic drift in a small population of fruit flies.
Evolution in Action
[ Palumbi 2001 ]
This paper describes some of the many ways in which humans are rewriting the story of evolution and how those changes incur an economic cost.
[ Berry 2009 ]
This paper describes the views of modern scientists on some of the ways that reading Darwin's original book enriches our understanding of evolution.
[ Clack 2009 ]
Jennifer Clack has made very important studies of the fossil record and what it has to say about the fish-tetrapod transition.
[ Theweissen 2009 ]
Thewissen has been a key player in the study of the fossil record of whales and this article gives an impression of progress that has been made in this beautiful and important area.
[ Pimm 2014 ]
This paper describes modern attempts at taking stock of biodiversity.
Naturalists with Genomes - Island Biogeography - Wallace and Island Biogeography
[ A Wallace Line Reader ]
This is a collection of writings from Alfred Russel Wallace, articles about Wallace and his work, and papers on the biogeography, evolution, and biodiversity of species in Southeast Asia.
[ Lovejoy 2013 ]
This report describes a beautiful experiment carried out in the forests of South America that tests some of the ideas on "island biogeography" in isolated ecosystems.
[ Emerson 2002 ]
This paper shows how modern molecular understanding has enriched our study of evolution on islands.
[ Bailey 1976 ]
This interesting paper provides a puzzle by telling us the ages of the Galapagos Islands. The puzzle concerns the age of the finches which appears to be longer than the age of the islands themselves.
